PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0788s00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 330aa    MW: 37569.8 Da    PI: 4.5709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0788s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1983132255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +grW+AeIrd +     + +r++lg++ taeeAa  +++a+ +++g
  Vang0788s00040.1  83 KFRGVRQRP-WGRWAAEIRDpF-----KqTRIWLGTYNTAEEAAMVYDKAAISFRG 132
                       89*******.**********66.....34***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-2882140IPR001471AP2/ERF domain
PROSITE profilePS5103222.64283140IPR001471AP2/ERF domain
CDDcd000184.80E-3183139No hitNo description
PfamPF008471.8E-1283132IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2183139IPR016177DNA-binding domain
SMARTSM003803.4E-3383146IPR001471AP2/ERF domain
PRINTSPR003674.4E-108495IPR001471AP2/ERF domain
PRINTSPR003674.4E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEVSFSEEK FVTYKHVDHG ILNQTAKVVR ISMTDADVTD DEDEGFVKLH KTKKIVNEIR  60
IVKKKPSTSV SVKQHIKEPG RRKFRGVRQR PWGRWAAEIR DPFKQTRIWL GTYNTAEEAA  120
MVYDKAAISF RGCHALTNFI KPPTMEDIHK SSTQEDMPME DMHKSYTKED MLTMEDMHKS  180
STKEDMPTME DMHMDAVSFE YGCYDESQGS WSGLVENVSG GAGSSRESHL SSPTSVLGLQ  240
HEKLVPEEVF ETEGLFIEDP SFEDTFSFVD LYLPSIDFNS GIDFMVDTNV KPSDDDRCDI  300
SPLDNENFQS FNWDIDSYFN DLSSPKTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2182139159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-2182139462ATERF1
3gcc_A4e-2182139462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491449.10.0PREDICTED: ethylene-responsive transcription factor CRF4
TrEMBLV7BQH51e-111V7BQH5_PHAVU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-37cytokinin response factor 4